Case Of: Debabrata Bhowmick
Issued By: High Court of Gauhati
Order No: Writ Petition (C) No. 2332/2026
Date: 24th June 2026
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Judgement

Bona fide proceeding for Rectification of Order will save the GST Appeal from Limitation Bar

Observations

The petitioner, proprietor of M/s Harekrishna Drugs, was subjected to a proceeding culminating into an Order-in-Original dated 03.01.2025 confirming demand of ITC, interest and penalty, passed by Adjudicating Authority.

Instead of filing an appeal u/s 107, the petitioner filed an application for rectification of mistake under Section 161 on 08.03.2025, contending that disallowance of ITC was based on an apparent error and that the supplier had filed returns belatedly.

The rectification application was rejected on 24.04.2025 on a ground that reason cited in the application was not found satisfactory. Thereafter, the petitioner filed appeal under Section 107 on 23.05.2025 challenging sustainability of both the Order-in-Original as well as Order-in-Rectification Application.

Appellate Authority rejected the appeal as time-barred by computing limitation from the date of Order-in-Original and by treating the appeal as filed beyond the normal three-month period and further condonable period of one month.

Judgement

The Hon’ble Gauhati High Court held that the time spent in pursuing rectification proceeding under Section 161 can be excluded while computing limitation for filing appeal under Section 107, provided such rectification proceedings were pursued with due diligence and good faith.

The Court applied the principles of Section 14 of the Limitation Act and held that although Section 5 of the Limitation Act cannot extend GST appeal limitation beyond the statutory cap, exclusion of time for bona fide proceedings can still apply

After excluding 48 days spent in rectification proceeding, the appeal was not within the normal limitation period, but it was within the further condonable period under Section 107(4).

The Court held that absence of a separate delay condonation application is a curable defect. Appellate Authority ought to have given the taxpayer at least one opportunity to file such application and explain the delay before rejecting the appeal.

The appellate order rejecting the appeal on limitation was therefore set aside and the matter was remanded to Appellate Authority for fresh consideration.

Takeaways

Exclusion of time spent in rectification proceeding is not automatic. The taxpayer must show that rectification was pursued with due diligence and good faith.

The judgment is also significant on the doctrine of merger. The Court reiterated that where an appeal is dismissed on limitation without entering into merits, the original order does not merge with the appellate order.

The Court did not treat rejection of rectification under Section 161 as a fresh starting point of limitation. Instead, it granted relief by excluding bona fide time spent in rectification proceedings.